GE Pipeline’s runtime scales with panel size, sequencing depth, and # cells, some actual run times are shown below. Similar runtimes are expected for on-premise execution with 32 cores being used for multiprocessing. In general, the runtimes are slightly longer than the Tapestri Pipeline V2 DNA pipeline.
|Panel size (# amplicons)||Total read pairs||# cells||Runtime|
|45||139.05 M||489||11h 33m|
|45||130.92 M||1,419||7h 13m|
|49||86.99 M||22,496||17h 50m|
|266||94.25 M||1,811||6h 17m|
|266||942.67 M||1,991||2d 4h 26m|