Tapestri Pipeline

Videos

• Tapestri Pipeline: Processing DNA + Protein sequencing data

Tapestri Pipeline

• Tapestri Pipeline Getting Started Guide
• Tapestri Pipeline User Guide
• Run Report Metrics
• Pipeline execution status and failure
• Preflight checks (QC)
• Alignment to VCF

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Output Files

• Pipeline output files overview
• File: barcode.cell.coverage.tsv
• File: barcode.cell.distribution.merged.tsv
• File: cells.loom
• File: cells.vcf.gz
• File: index.cells.bam

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Algorithms Overview

• Adapter trimming and barcode extraction
• ADO Calculation
• Barcode correction
• Cell calling
• Custom FLT3-ITD calling
• FASTQ quality analysis

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FAQs

• How long will files be available in Tapestri Pipeline?
• How does Pipeline integrate with Amazon S3 buckets?
• How do I generate an Illumina BaseSpace Access Token?
• Why can't I add users to my group?
• Does the Tapestri Platform support detection of VDJ?
• How do I find the Pipeline version number?

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Release Notes

• Tapestri DNA, DNA + Protein Pipeline 27 Jan 2021
• Tapestri DNA Pipeline v1.10 17 Nov 2019
• Tapestri DNA Pipeline v1.6 2018