GE Pipeline’s runtime scales with panel size, sequencing depth, and # cells, some actual run times are shown below. Similar runtimes are expected for on-premise execution with 32 cores being used for multiprocessing. In general, the runtimes are slightly longer than the Tapestri's DNA pipeline.
| # Amplicons in panel (count) | # of Read pairs (million) | # cells (count) | Run time (hr) |
| 26 | 178.66 | 22,812 | 20.5 |
| 89 | 40.67 | 4,322 | 5.25 |
| 266 | 901.99 | 1,725 | 26.2 |
| 312 | 136.86 | 3,120 | 7.5 |
| 545 | 1150 | 6,802 | 64 |