GE Pipeline’s runtime scales with panel size, sequencing depth, and # cells, some actual run times are shown below. Similar runtimes are expected for on-premise execution with 32 cores being used for multiprocessing. In general, the runtimes are slightly longer than the Tapestri Pipeline V2 DNA pipeline.
| Panel size (# amplicons) | Total read pairs | # cells | Runtime |
| 45 | 2.99 M | 435 | 50m |
| 45 | 139.05 M | 489 | 11h 33m |
| 45 | 130.92 M | 1,419 | 7h 13m |
| 49 | 86.99 M | 22,496 | 17h 50m |
| 266 | 94.25 M | 1,811 | 6h 17m |
| 266 | 942.67 M | 1,991 | 2d 4h 26m |