File: [panel-id].gatk

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gatk.png

[panel-id].gatk is a file with 4 columns – chromosome number, insert start position, insert end position, and amplicon ID. The insert coordinates in this file are used by Tapestri Pipeline in the GATK HaplotypeCaller step to call variants.

It shows one-based, fully closed coordinates for the insert.

View more details about the coordinate system here.

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